Dmitrieva, J., Verbeek F.J. (2010)
Creating a new Ontology: a Modular Approach.
Proceedings SWAT4LS (2010)

Kallergi, A., Verbeek, F.J. (2010)
Onto-Frogger: The Making Of.
Proceedings of the 6th Nordic Conference on Human-Computer Interaction (Oct.16–20, 2010)
Eds. Blandford, A., Gulliksen, J., Hvannberg, E.T., Larusdottir M.K., L-C Law, E., Vilhjalmsson H.H.
ACM Conf.Proceedings Series, ISBN 978-1-60558-934-3. Reykjavik, Iceland; pp 691-694

Kallergi, A., Verbeek, F.J. (2010)
Video Games for Collection Exploration: Games for and out of Data Repositories.
Proceedings of the 14th International Academic MindTrek Conference:
Envisioning Future Media Environments
Eds. Lugmayr A., Franssila H., Sotamaa O., Safran C., Aaltonen T.
ACM Digital Library, ISBN: 978-1-4503-0011-7. Tampere, Finland; pp 143 -146

Nezhinsky A., Verbeek F.J. (2010)
Pattern recognition for high throughput zebrafish imaging using genetic algorithm optimization.
5th IAPR Conference on Pattern Recognition in BioInformatics (PRIB 2010).
Lecture Notes in BioInformatics 6282 (eds. Dijkstra T., Tsivtsivadze, E., Heskes, T., Marchiori E.)
Springer, (Berlin - Heidelberg) 301-312

Bathoorn R., Welten M., Richardson M., Siebes A., Verbeek, F.J. (2010)
Frequent Episode Mining to support Pattern Analysis in Developmental Biology.
5th IAPR Conference on Pattern Recognition in BioInformatics (PRIB 2010).
Lecture Notes in BioInformatics 6282 (eds. Dijkstra T., Tsivtsivadze, E., Heskes, T., Marchiori E.)
Springer, (Berlin - Heidelberg) 253-263

LeDévédec S., Yan K., de Bont H., Ghotra V., Truong H.,
Danen E., Verbeek F.J., vande Water B.(2010)
A Systems Microscopy Approach to Understand Cancer Cell Migration and Metastasis.
journal Cellular and Molecular Life Sciences 2010;67(19):3219-3240

Bertens,L.M.F.,Kleijn,J., Koutny, M., Verbeek, F.J. (2010)
Modeling Gradients with Petri Nets
Workshop on Biological Processes and Petri Nets (BioPPN) - Petri Nets 2010, Braga (In Press)

Belmamoune, M., Potikanond, D., Verbeek, F.J. (2010)
Mining and analysing spatio-temporal patterns of gene expression in an integrative database framework.
Journal of Integrative Bioinformatics, 7(3):128, 1-10, 2010 [PDF]

Zhang, Y., Verbeek, F.J. (2010)
Comparison and Integration of Target Prediction Algorithms for microRNA Studies.
Journal of Integrative Bioinformatics, 7(3):127, 1-12, 2010 [PDF]

Bertens,L.M.F., Richardson, M.K., Verbeek, F.J. (2010)
Analysis of cardiac development in the turtle Emys orbicularis (Testudines: Emidydae)
using 3D computer modeling and reconstruction based on serial sections.
Anatomical Record, Vol. 293,7; 1101-1114

Yan, K., Bertens, L.F.M., Verbeek, F.J. (2010)
Image Registraton and Realignment using Evolutionary Algorithms with High resolution 3D model from Human Liver.
Proceedings CGIM 2010 (Eds. Sappa,A.D.) 11th IASTED International Conference on Computer Graphics and Imaging. Innsbruck, Austria, February 2010: 679-014.

Dmitrieva, J., Verbeek, F.J. (2010)
Different Geometries in Ontology Visualization.
Visualization and Data Analysis (Eds.Jinah Park, Ming C. Hao, Pak C. Wong, Chaomei Chen)
Proceedings SPIE EI 2010, Volume 7530, San Jose, USA, January 2010. 7530007 - 12 pages

Nezhinsky, A., Kruisselbrink, J., Verbeek, F.J. (2010)
Convex Shape Retrieval from Edge Maps by the use of an Evolutionary Algorithm
1st International Conference on Bioinformatics, Valencia, Spain
Proceedings Bioinformatics 2010 (Eds.Fred,A., Filipe,J., & Gamboa,H.): 221-225

Hawrylycz M., Boline J., Burger A., Hashikawa T., Johnson G.A., Martone M., Ng L., Nissanov J., Puelles L., Ruffins S., Verbeek F.J. & Zaslavsky I.(2009)
The INCF Digital Atlasing Program: Report on Digital Atlasing Standards in the Rodent Brain.
Nature Proceedings. Report, (doi:10.1038/npre.2009.4000.1.) 43 pages.