Kallergi, A., Verbeek, F.J. (2009)
Onto-Frogger: Playing with Semantic Structure.
Proceedings Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS)
CEUR-Workshop Proceedings ISSN 1613-0073, [PDF]
Volume 559 (Eds. Marshall, S.M.,Burger A.,Romano P.,Paschke A.,Splendiani A.)
Amsterdam, The Netherlands, November 20, 2009

Slob, J., Kallergi, A., Verbeek, F.J. (2009)
Observations on Semantic Annotation of Microscope Images for Life Sciences
Proceedings Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS)
CEUR-Workshop Proceedings ISSN 1613-0073, [PDF]
Volume 559 (Eds. Marshall, S.M.,Burger A.,Romano P.,Paschke A.,Splendiani A.)
Amsterdam, The Netherlands, November 20, 2009

Dmitrieva, J., Verbeek, F.J. (2009)
Integration of information from different ontologies.
Proceedings Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS)
CEUR-Workshop Proceedings ISSN 1613-0073, [PDF]
Volume 559 (Eds. Marshall, S.M.,Burger A.,Romano P.,Paschke A.,Splendiani A.)
Amsterdam, The Netherlands, November 20, 2009

Dmitrieva, J., Verbeek, F.J. (2009)
Node-Link and Containment Methods in Ontology Visualization.
Proceedings OWLED 2009, Washington DC, USA (http://www.webont.org/owled/20...).

Papakonstantinou, C., Ioannis Panagiotou, I., Verbeek, F.J. (2009)
Tag Based Meta-Search for Browsing the Web: The TicTag Application.
Proceedings HCI 2009, People and Computers XXIII – Celebrating people and technology.
British Computer Society, United Kingdom: 354 -361

Giannoulis, S., Verbeek, F.J. (2009)
The happiness cube paradigm; eliciting happiness through sound, video, light and odor. Assessment of affective state with non-invasive techniques.
In: 4th International Workshop on Emotion and Computing,
in conj. with 32nd Annual Conference on Artificial Intelligence (KI2009), Paderborn, Germany: 7–14,

Zhang, Y., de Bruin, J.S., Verbeek, F.J. (2009)
Specificity Enhancement in microRNA Target Prediction through Knowledge Discovery.
(In: Machine Learning. (Eds. V. Kordic), (ISBN 978-953-7) (In Press)

Sebastiaan A. Brittijn, Suzanne J. Duivesteijn, Mounia Belmamoune, Laura F.M.Bertens, Wilbert Bitter, Joost D. de Bruijn, Danielle L. Champagne, Edwin Cuppen, Gert Flik, Christina M. Vandenbroucke-Grauls, Richard A.J. Janssen, Ilse M.L. de Jong, Edo Ronald de Kloet, Alexander Kros, Annemarie H. Meijer, Juriaan R. Metz, Astrid M. van der Sar, Marcel J.M. Schaaf, Stefan Schulte-Merker, Herman P. Spaink, Paul P. Tak, Fons J. Verbeek, Margriet J. Vervoordeldonk, Freek J. Vonk, Frans Witte, Huipin Yuan and Michael K. Richardson (2009)
Zebrafish development and regeneration: new tools for biomedical research.
Int. J. Dev. Biol. (2009) 53: 835-850

Kallergi, A., Bei, Y., Kok., P., Dijkstra, J., Abrahams, J.P., Verbeek, F.J. (2009)
Cyttron: A Virtualized Microscope supporting image integration and knowledge discovery.
In: Cell Death and Disease Series (Eds.Backendorf,Noteborn,Tavassoli):
Proteins Killing Tumour Cells, ResearchSignPost, Kerala India, 291-315

Papakonstantinou, C., Ioannis Panagiotou, I., Verbeek, F.J. (2009)
Tag Based Meta-Search for Browsing the Web: The TicTag Application.
Proceedings CHI-NL, (Eds.: Verbeek, Lenior, Steen), Leiden, The Netherlands, pg. 93-101.

Dmitrieva, J., Verbeek, F.J. (2009)
Multi-view Ontology Visualization.
Proceedings 11th International Protege Conference [PDF]

Kallergi, A., Bei, Y., Verbeek, FJ. (2009)
The Ontology Viewer: Facilitating Image Annotation with Ontology Terms in the CSIDx imaging Database.
Proceedings VISS-WS 2009, CEUR-WS Proceedings Vol. 443 (http://ceur-ws.org)

Yan, K., Le Devedec, S., van de Water, B., Verbeek, F.J. (2009)
Cell Tracking and Data Analisys of in vitro Tumour Cells from Time-Lapse Image Sequences.
Proceedings VISAPP 2009 Volume 1, 281-287.

Roël, G., Gent Y.J., Peterson-Maduro, J., Verbeek, F.J. & Destrée, O. (2009)
Lef1 plays a role in patterning the mesoderm and ectoderm in Xenopus tropicalis.
International Journal of Developmental Biology 53: 81-89

Lenneke W.A van Hooijdonk, Muhammad Ichwan, Thomas F. Dijkmans, Theo G. Schouten, Fons J. Verbeek, Erno Vreugdenhil, Carlos P. Fitzsimons (2009)
Lentivirus-mediated transgene delivery to the hippocampus reveals sub-field specific differences in expression.
BMC Neuroscience 10:2 (13 January 2009)

Mounia Belmamoune
Spatio-Temporal Framwork for Inegrative Analysis of Zebrafish developmental Studies.
PhD Thesis, Leiden University. ISBN 978-90-9024866